#How to install mpi on ubuntu software#

Also, many comp-neuro packages and software have a tendency of being most heavily tested on *nix systems. Ubuntu Linux (16.04+): If you plan on running your models on clusters or other HPC systems, *nix will be unavoidable.Update: A pure script version of the steps below is described in the following followup tutorial: Using NEURON simulator with Python and Travis CI Major Installation Steps IвЂ™ve tested the steps below on several virgin Ubuntu machines. This tutorial puts all the small pieces together in one place. Most of this is similar to the steps to compile the standard NEURON distribution, with many crucial extra pieces that were scattered around the NEURON site (without those pieces, youвЂ™ll encounter several errors). Using the standard installation, attempting to import the вЂneuronвЂ™ module will result in the following error:Д«elow are the steps to get the above to work. When it works, it should look like the image below: The goal of this tutorial is to show the steps necessary to enable the use of NEURON simulator from an external Python script.

However, the default NEURON installation will not allow scripting NEURON from an external Python file. Many model building tasks can be accomplished using Python. NEURON simulator is a popular computational neuroscience tool for creating biophysically realistic models of neurons and neural networks.